License

Last updated: 2020-02-24

Checks: 2 0

Knit directory: amnio-cell-free-RNA/

This reproducible R Markdown analysis was created with workflowr (version 1.6.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 5dc9543

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rproj.user/
    Ignored:    code/salmon-limma-voom.nb.html
    Ignored:    data/190717_A00692_0021_AHLLHFDSXX/
    Ignored:    data/GONE4.10.13.txt
    Ignored:    data/HK_genes.txt
    Ignored:    data/IPA molecule summary.xls
    Ignored:    data/IPA-molecule-summary.csv
    Ignored:    data/brain-development-geneset.txt
    Ignored:    data/joindata.csv
    Ignored:    data/metadata.csv
    Ignored:    data/samples.csv
    Ignored:    output/c2Ens.RData
    Ignored:    output/c5Ens.RData
    Ignored:    output/exclude-CMV11/
    Ignored:    output/hEns.RData
    Ignored:    output/keggEns.RData
    Ignored:    output/salmon-limma-voom-c5Cam.csv
    Ignored:    output/salmon-limma-voom.Rmd/
    Ignored:    output/salmon-limma-voom.csv
    Ignored:    output/salmon-ruvseq-edger.csv

Untracked files:
    Untracked:  analysis/salmon-limma-voom-exclude-CMV11.Rmd
    Untracked:  analysis/salmon-limma-voom.Rmd
    Untracked:  analysis/salmon-ruvseq-edger.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File	Version	Author	Date	Message
html	89b29ff	Jovana Maksimovic	2020-02-24	Build site.
Rmd	0d8231a	Jovana Maksimovic	2020-02-24	wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”, “analysis/license.Rmd”))
Rmd	ab6655b	Jovana Maksimovic	2020-02-24	Start workflowr project.